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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G13930.1
PEP
AT5G13930.1
Position on the Genome Chromosome Chr5
Start Position 4488762
End Position 4490035
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00011172
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Chalcone/stilbene synthase, C-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Chalcone synthase
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF02797,PF00195
Pfam Description Details
InterPro ID
IPR018088,IPR011141,IPR012328,IPR001099,IPR016039
InterPro Description Details
GO ID
GO:0009629,GO:0031540,GO:0016210,GO:0006979,GO:0009733,GO:0009611,GO:0009813,GO:0005634,GO:0005783,GO:0009705,GO:0009926,GO:0009753,GO:0010224
GO Description Details
GOslim ID
GO:0005634,GO:0050896,GO:0005783,GO:0016020,GO:0008152,GO:0016740,GO:0009914,GO:0044238,GO:0050789,GO:0005773,GO:0042440
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G13930
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Chalcone synthase
OrthoDB(1 item)
93785at33090
Chalcone/stilbene synthase, C-terminal
Pfam(2 items)
 
Chalcone and stilbene synthases, C-terminal domain
 
Chalcone and stilbene synthases, N-terminal domain
InterPro(5 items)
 
Chalcone/stilbene_synthase_AS
 
Polyketide_synthase_type-III
 
Chalcone/stilbene synthase, C-terminal
 
Chalcone/stilbene synthase, N-terminal
 
Thiolase-like
Gene ontology(13 items)
BP
response to gravity
BP
regulation of anthocyanin biosynthetic process
MF
naringenin-chalcone synthase activity
BP
response to oxidative stress
BP
response to auxin
BP
response to wounding
BP
flavonoid biosynthetic process
CC
endoplasmic reticulum
CC
plant-type vacuole membrane
BP
auxin polar transport
BP
response to jasmonic acid
BP
response to UV-B
GO slim(11 items)
BP
response to stimulus
CC
endoplasmic reticulum
BP
metabolic process
MF
transferase activity
BP
hormone transport
BP
primary metabolic process
BP
regulation of biological process
BP
pigment metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.