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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G13840.1
PEP
AT5G13840.1
Position on the Genome Chromosome Chr5
Start Position 4468677
End Position 4470706
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00245457
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
WD40 repeat
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
FZR3
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00400
Pfam Description Details
InterPro ID
IPR017986,IPR001680,IPR033010,IPR019775,IPR015943,IPR036322
InterPro Description Details
GO ID
GO:1904668,GO:0010997,GO:0097027,GO:0016567
GO Description Details
GOslim ID
GO:0065009,GO:0006464,GO:0005488,GO:0019787,GO:0030234,GO:0050789
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
OrthoDB(1 item)
112462at33090
WD40 repeat
Pfam(1 item)
 
WD domain, G-beta repeat
InterPro(6 items)
 
WD40_repeat_dom
 
WD40_repeat_CS
 
WD40/YVTN_repeat-like_dom_sf
 
WD40_repeat_dom_sf
Gene ontology(4 items)
BP
positive regulation of ubiquitin protein ligase activity
MF
anaphase-promoting complex binding
MF
ubiquitin-protein transferase activator activity
BP
protein ubiquitination
GO slim(6 items)
BP
regulation of molecular function
BP
cellular protein modification process
MF
ubiquitin-like protein transferase activity
MF
enzyme regulator activity
BP
regulation of biological process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.