Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G13820.1
PEP
AT5G13820.1
Position on the Genome Chromosome Chr5
Start Position 4461694
End Position 4464355
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00192191
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
SANT/Myb domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Telomere repeat-binding protein 4
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
NA
Pfam Description
InterPro ID
IPR001005,IPR009057,IPR017930,IPR000626
InterPro Description Details
GO ID
GO:0042162,GO:0003691,GO:0000781,GO:0003677,GO:0000723,GO:0005634
GO Description Details
GOslim ID
GO:0006259,GO:0003676,GO:0005694,GO:0051276,GO:0005634,GO:0065008
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Telomere repeat-binding protein 4
OrthoDB(1 item)
61153at33090
SANT/Myb domain
InterPro(4 items)
 
SANT/Myb domain
 
Homeobox-like_sf
 
Ubiquitin domain
Gene ontology(6 items)
MF
telomeric DNA binding
MF
double-stranded telomeric DNA binding
CC
chromosome, telomeric region
BP
telomere maintenance
GO slim(6 items)
BP
DNA metabolic process
MF
nucleic acid binding
BP
chromosome organization
BP
regulation of biological quality

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.