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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G13650.2
PEP
AT5G13650.2
Position on the Genome Chromosome Chr5
Start Position 4397821
End Position 4402364
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00066425
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Transcription factor, GTP-binding domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Putative elongation factor TypA-like SVR3, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00009,PF03144,PF00679
Pfam Description Details
InterPro ID
IPR000640,IPR005225,IPR006298,IPR009000,IPR000795,IPR004161,IPR031157,IPR035647,IPR042116,IPR035651,IPR027417
InterPro Description Details
GO ID
GO:0003746,GO:0009409,GO:0006364,GO:1990904,GO:0005525,GO:0009507,GO:0050821,GO:0003924
GO Description Details
GOslim ID
GO:0043167,GO:0009536,GO:0000166,GO:0016787,GO:0050896,GO:0042254,GO:1990904,GO:0006396,GO:0003676,GO:0031647,GO:0001882,GO:0045182
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G13650
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Putative elongation factor TypA-like SVR3, chloroplastic
OrthoDB(1 item)
80493at33090
Transcription factor, GTP-binding domain
Pfam(3 items)
 
Elongation factor Tu GTP binding domain
 
Elongation factor Tu domain 2
 
Elongation factor G C-terminus
InterPro(11 items)
 
Elongation factor EFG, domain V-like
 
Small_GTP-bd_dom
 
Transl_B-barrel_sf
 
Transcription factor, GTP-binding domain
 
Translation elongation factor EFTu-like, domain 2
 
P-loop_NTPase
Gene ontology(8 items)
MF
translation elongation factor activity
BP
response to cold
BP
rRNA processing
CC
ribonucleoprotein complex
BP
protein stabilization
MF
GTPase activity
GO slim(12 items)
MF
nucleotide binding
MF
hydrolase activity
BP
response to stimulus
BP
ribosome biogenesis
CC
ribonucleoprotein complex
BP
RNA processing
MF
nucleic acid binding
BP
regulation of protein stability
MF
nucleoside binding
MF
translation regulator activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.