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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G11060.1
PEP
AT5G11060.1
Position on the Genome Chromosome Chr5
Start Position 3510408
End Position 3512967
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00465310
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Homeobox domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Homeobox protein knotted-1-like 4
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF05920,PF03791,PF03790,PF03789
Pfam Description Details
InterPro ID
IPR005540,IPR009057,IPR008422,IPR005539,IPR001356,IPR005541
InterPro Description Details
GO ID
GO:0006357,GO:0005829,GO:0005634,GO:0009416,GO:0000978,GO:0003700,GO:0000981,GO:0000790
GO Description Details
GOslim ID
GO:0050789,GO:0006351,GO:0065009,GO:0003676,GO:0005737,GO:0005634,GO:0005694,GO:0050896
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
TALE family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Homeobox protein knotted-1-like 4
OrthoDB(1 item)
146324at33090
Homeobox domain
Pfam(4 items)
 
Homeobox KN domain
 
KNOX2 domain
 
KNOX1 domain
 
ELK domain
InterPro(6 items)
 
Homeobox-like_sf
 
Homeobox KN domain
 
Homeobox domain
Gene ontology(8 items)
BP
regulation of transcription by RNA polymerase II
BP
response to light stimulus
MF
RNA polymerase II cis-regulatory region sequence-specific DNA binding
MF
DNA-binding transcription factor activity
MF
DNA-binding transcription factor activity, RNA polymerase II-specific
GO slim(8 items)
BP
regulation of biological process
BP
transcription, DNA-templated
BP
regulation of molecular function
MF
nucleic acid binding
BP
response to stimulus

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.