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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G08020.1
PEP
AT5G08020.1
Position on the Genome Chromosome Chr5
Start Position 2572107
End Position 2574879
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00261263
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Replication factor A, C-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Replication protein A subunit
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF16900,PF01336,PF08646,PF04057
Pfam Description Details
InterPro ID
IPR007199,IPR004365,IPR031657,IPR013955,IPR012340,IPR004591
InterPro Description Details
GO ID
GO:0003677,GO:0006310,GO:0046872,GO:0006260,GO:0006281,GO:0005634
GO Description Details
GOslim ID
GO:0003676,GO:0043167,GO:0006260,GO:0006259,GO:0006281,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Replication protein A subunit
OrthoDB(1 item)
89930at33090
Replication factor A, C-terminal
Pfam(4 items)
 
Replication protein A OB domain
 
OB-fold nucleic acid binding domain
 
Replication factor-A C terminal domain
 
Replication factor-A protein 1, N-terminal domain
InterPro(6 items)
 
Replication factor-A protein 1, N-terminal
 
OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
 
Replication protein A, OB domain
 
Replication factor A, C-terminal
 
NA-bd_OB-fold
Gene ontology(6 items)
BP
DNA recombination
MF
metal ion binding
BP
DNA replication
GO slim(6 items)
MF
nucleic acid binding
BP
DNA replication
BP
DNA metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.