Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G06960.1
PEP
AT5G06960.1
Position on the Genome Chromosome Chr5
Start Position 2155742
End Position 2157400
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00319422
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Transcription factor TGA like domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Transcription factor TGA5
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF14144,PF00170
Pfam Description Details
InterPro ID
IPR025422,IPR004827
InterPro Description Details
GO ID
GO:0009863,GO:0000976,GO:0009814,GO:0042802,GO:0006351,GO:0005634,GO:0009410,GO:0003677,GO:0003700
GO Description Details
GOslim ID
GO:0005634,GO:0003676,GO:0050789,GO:0002376,GO:0050896,GO:0005515,GO:0007154,GO:0006351,GO:0044419,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
bZIP family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT5G06960
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Transcription factor TGA5
OrthoDB(1 item)
140497at33090
Transcription factor TGA like domain
Pfam(2 items)
 
Seed dormancy control
 
bZIP transcription factor
InterPro(2 items)
 
Transcription factor TGA like domain
 
Basic-leucine zipper domain
Gene ontology(9 items)
BP
salicylic acid mediated signaling pathway
MF
transcription regulatory region sequence-specific DNA binding
BP
defense response to other organism
MF
identical protein binding
BP
transcription, DNA-templated
BP
response to xenobiotic stimulus
MF
DNA-binding transcription factor activity
GO slim(10 items)
MF
nucleic acid binding
BP
regulation of biological process
BP
immune system process
BP
response to stimulus
MF
protein binding
BP
cell communication
BP
transcription, DNA-templated
BP
interspecies interaction between organisms
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.