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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G05610.1
PEP
AT5G05610.1
Position on the Genome Chromosome Chr5
Start Position 1677331
End Position 1678942
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00026233
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, PHD-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
PHD finger protein ALFIN-LIKE 1
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF12165,PF00628
Pfam Description Details
InterPro ID
IPR019787,IPR013083,IPR011011,IPR001965,IPR044104,IPR021998,IPR019786
InterPro Description Details
GO ID
GO:0035064,GO:0006355,GO:0006325,GO:0003712,GO:0046872,GO:0000976,GO:0005634
GO Description Details
GOslim ID
GO:0009059,GO:0050789,GO:0065009,GO:0005515,GO:0043167,GO:0006351,GO:0051276,GO:0005634,GO:0003676,GO:0016070
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
PHD finger protein ALFIN-LIKE 1
OrthoDB(1 item)
192515at33090
Zinc finger, PHD-type
Pfam(2 items)
 
PHD-finger
InterPro(7 items)
 
Zinc finger, PHD-finger
 
Znf_RING/FYVE/PHD
 
Zinc_finger_PHD-type_CS
Gene ontology(7 items)
MF
methylated histone binding
BP
regulation of transcription, DNA-templated
BP
chromatin organization
MF
transcription coregulator activity
MF
metal ion binding
MF
transcription regulatory region sequence-specific DNA binding
GO slim(10 items)
BP
macromolecule biosynthetic process
BP
regulation of biological process
BP
regulation of molecular function
MF
protein binding
BP
transcription, DNA-templated
BP
chromosome organization
MF
nucleic acid binding
BP
RNA metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.