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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G04340.1
PEP
AT5G04340.1
Position on the Genome Chromosome Chr5
Start Position 1216321
End Position 1217037
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00251775
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger C2H2 superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Zinc finger protein ZAT6
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
NA
Pfam Description
InterPro ID
IPR013087,IPR036236
InterPro Description Details
GO ID
GO:0071456,GO:0046872,GO:0003700,GO:0055062,GO:2000280,GO:0005634,GO:0000978
GO Description Details
GOslim ID
GO:0003676,GO:0006351,GO:0065008,GO:0005634,GO:0043167,GO:0050896,GO:0032502,GO:0050789,GO:0032501,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
C2H2 family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Zinc finger protein ZAT6
OrthoDB(1 item)
205759at33090
Zinc finger C2H2 superfamily
InterPro(2 items)
 
Zinc finger C2H2-type
Gene ontology(7 items)
BP
cellular response to hypoxia
MF
metal ion binding
MF
DNA-binding transcription factor activity
BP
phosphate ion homeostasis
BP
regulation of root development
MF
RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO slim(10 items)
MF
nucleic acid binding
BP
transcription, DNA-templated
BP
regulation of biological quality
BP
response to stimulus
BP
developmental process
BP
regulation of biological process
BP
multicellular organismal process
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.