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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT5G01380.1
PEP
AT5G01380.1
Position on the Genome Chromosome Chr5
Start Position 155784
End Position 157451
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00641215
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Trihelix transcription factor GT3
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Trihelix transcription factor GT-3a
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
NA
Pfam Description
InterPro ID
IPR027759,IPR017877,IPR001005
InterPro Description Details
GO ID
GO:0042802,GO:0003700,GO:0005634,GO:0006355,GO:0043565
GO Description Details
GOslim ID
GO:0003676,GO:0005634,GO:0006351,GO:0005515,GO:0050789,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
Trihelix family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Trihelix transcription factor GT-3a
OrthoDB(1 item)
198381at33090
Trihelix transcription factor GT3
InterPro(3 items)
 
Trihelix_TF_GT3
 
SANT/Myb domain
Gene ontology(5 items)
MF
identical protein binding
MF
DNA-binding transcription factor activity
BP
regulation of transcription, DNA-templated
MF
sequence-specific DNA binding
GO slim(6 items)
MF
nucleic acid binding
BP
transcription, DNA-templated
MF
protein binding
BP
regulation of biological process
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.