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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G39890.1
PEP
AT4G39890.1
Position on the Genome Chromosome Chr4
Start Position 18506112
End Position 18507459
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00404114
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Small GTPase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Ras-related protein RABH1c
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00071
Pfam Description Details
InterPro ID
IPR027417,IPR005225,IPR001806
InterPro Description Details
GO ID
GO:0012505,GO:0006890,GO:0042147,GO:0006886,GO:0005525,GO:0005829,GO:0005794,GO:0003924,GO:0000139,GO:0006891,GO:0005886
GO Description Details
GOslim ID
GO:0016787,GO:0005794,GO:0015031,GO:0001882,GO:0051641,GO:0005737,GO:0016020,GO:0043167,GO:0000166,GO:0016192,GO:0005575,GO:0005773
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT4G39890
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Ras-related protein RABH1c
OrthoDB(1 item)
162167at33090
Small GTPase
Pfam(1 item)
 
Ras family
InterPro(3 items)
 
P-loop_NTPase
 
Small_GTP-bd_dom
Gene ontology(11 items)
CC
endomembrane system
BP
retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
BP
retrograde transport, endosome to Golgi
BP
intracellular protein transport
CC
Golgi apparatus
MF
GTPase activity
CC
Golgi membrane
BP
intra-Golgi vesicle-mediated transport
CC
plasma membrane
GO slim(12 items)
MF
hydrolase activity
CC
Golgi apparatus
BP
protein transport
MF
nucleoside binding
BP
cellular localization
MF
nucleotide binding
BP
vesicle-mediated transport
CC
cellular_component

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.