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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G39370.3
PEP
AT4G39370.3
Position on the Genome Chromosome Chr4
Start Position 18306392
End Position 18308625
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01663543
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Ubiquitin specific protease, conserved site
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Ubiquitin-specific protease 27
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00443
Pfam Description Details
InterPro ID
IPR001394,IPR038765,IPR028889,IPR018200
InterPro Description Details
GO ID
GO:0016579,GO:0008234,GO:0031966,GO:0008233,GO:0031307,GO:0006511,GO:0004843
GO Description Details
GOslim ID
GO:0016020,GO:0005739,GO:0006464,GO:0009057,GO:0008233,GO:0006508
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Ubiquitin-specific protease 27
OrthoDB(1 item)
68760at33090
Ubiquitin specific protease, conserved site
Pfam(1 item)
 
Ubiquitin carboxyl-terminal hydrolase
InterPro(4 items)
 
Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 
Papain-like_cys_pep_sf
Gene ontology(7 items)
BP
protein deubiquitination
MF
cysteine-type peptidase activity
CC
mitochondrial membrane
MF
peptidase activity
CC
integral component of mitochondrial outer membrane
BP
ubiquitin-dependent protein catabolic process
MF
thiol-dependent ubiquitin-specific protease activity
GO slim(6 items)
CC
mitochondrion
BP
cellular protein modification process
BP
macromolecule catabolic process
MF
peptidase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.