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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G38960.3
PEP
AT4G38960.3
Position on the Genome Chromosome Chr4
Start Position 18161576
End Position 18163045
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01848149
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
B-box-type zinc finger
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
B-box type zinc finger family protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00643
Pfam Description Details
InterPro ID
IPR000315
InterPro Description Details
GO ID
GO:0006355,GO:0003700,GO:0010228,GO:0008270,GO:0009640,GO:0007623
GO Description Details
GOslim ID
GO:0050896,GO:0048511,GO:0032501,GO:0050789,GO:0032502,GO:0000003,GO:0065009,GO:0006351,GO:0043167,GO:0003676
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
DBB family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
B-box type zinc finger family protein
OrthoDB(1 item)
173455at33090
B-box-type zinc finger
Pfam(1 item)
 
B-box zinc finger
InterPro(1 item)
 
B-box-type zinc finger
Gene ontology(6 items)
BP
regulation of transcription, DNA-templated
MF
DNA-binding transcription factor activity
BP
vegetative to reproductive phase transition of meristem
MF
zinc ion binding
BP
photomorphogenesis
BP
circadian rhythm
GO slim(10 items)
BP
response to stimulus
BP
rhythmic process
BP
multicellular organismal process
BP
regulation of biological process
BP
developmental process
BP
regulation of molecular function
BP
transcription, DNA-templated
MF
nucleic acid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.