Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G37180.2
PEP
AT4G37180.2
Position on the Genome Chromosome Chr4
Start Position 17504648
End Position 17506107
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00987090
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Myb domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Transcription factor HHO5
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00249
Pfam Description Details
InterPro ID
IPR009057,IPR006447,IPR001005,IPR017930
InterPro Description Details
GO ID
GO:0003700,GO:0090701,GO:0010629,GO:0006355,GO:0003677,GO:0048449,GO:0005634,GO:0005829
GO Description Details
GOslim ID
GO:0006351,GO:0050789,GO:0005634,GO:0000003,GO:0065009,GO:0005737,GO:0003676,GO:0032502,GO:0032501,GO:0043170
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
G2-like family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Transcription factor HHO5
OrthoDB(1 item)
162129at33090
Myb domain
Pfam(1 item)
 
Myb-like DNA-binding domain
InterPro(4 items)
 
Homeobox-like_sf
 
Myb_dom_plants
 
SANT/Myb domain
Gene ontology(8 items)
MF
DNA-binding transcription factor activity
BP
specification of plant organ identity
BP
negative regulation of gene expression
BP
regulation of transcription, DNA-templated
BP
floral organ formation
GO slim(10 items)
BP
transcription, DNA-templated
BP
regulation of biological process
BP
regulation of molecular function
MF
nucleic acid binding
BP
developmental process
BP
multicellular organismal process
BP
macromolecule metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.