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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G35540.1
PEP
AT4G35540.1
Position on the Genome Chromosome Chr4
Start Position 16873939
End Position 16875522
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00219329
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Transcription factor TFIIB
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Plant-specific TFIIB-related protein PTF2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF08271
Pfam Description Details
InterPro ID
IPR036915,IPR013137,IPR000812
InterPro Description Details
GO ID
GO:0006352,GO:0005634,GO:0009793,GO:0000979,GO:0046872,GO:0001174,GO:0009846,GO:0097550,GO:0001139,GO:0001093,GO:0003690,GO:0008134,GO:0070063,GO:0042803,GO:0017025
GO Description Details
GOslim ID
GO:0005515,GO:0000003,GO:0032501,GO:0032502,GO:0003676,GO:0006351,GO:0043167,GO:0005634,GO:0065003,GO:0032993,GO:0051704
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Plant-specific TFIIB-related protein PTF2
OrthoDB(1 item)
131574at33090
Transcription factor TFIIB
Pfam(1 item)
 
TFIIB zinc-binding
InterPro(3 items)
 
Cyclin-like_sf
 
Zinc finger, TFIIB-type
Gene ontology(15 items)
BP
DNA-templated transcription, initiation
BP
embryo development ending in seed dormancy
MF
RNA polymerase II core promoter sequence-specific DNA binding
MF
metal ion binding
BP
transcriptional start site selection at RNA polymerase II promoter
BP
pollen germination
CC
transcription preinitiation complex
MF
RNA polymerase II complex recruiting activity
MF
TFIIB-class transcription factor binding
MF
double-stranded DNA binding
MF
transcription factor binding
MF
RNA polymerase binding
MF
protein homodimerization activity
MF
TBP-class protein binding
GO slim(11 items)
MF
protein binding
BP
multicellular organismal process
BP
developmental process
MF
nucleic acid binding
BP
transcription, DNA-templated
BP
protein-containing complex assembly
CC
protein-DNA complex
BP
multi-organism process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.