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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G30820.16
PEP
AT4G30820.16
Position on the Genome Chromosome Chr4
Start Position 15007187
End Position 15008378
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00440436
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Cdk-activating kinase assembly factor MAT1, centre
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF06391
Pfam Description Details
InterPro ID
IPR004575,IPR015877
InterPro Description Details
GO ID
GO:0005675,GO:0061575,GO:0006289,GO:0016301
GO Description Details
GOslim ID
GO:0000439,GO:0016591,GO:0016740,GO:0006793,GO:0050789,GO:0030234,GO:0006464,GO:0006281,GO:0007049,GO:0005515
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein
OrthoDB(1 item)
196488at33090
Cdk-activating kinase assembly factor MAT1, centre
Pfam(1 item)
 
CDK-activating kinase assembly factor MAT1
InterPro(2 items)
 
Cdk-activating kinase assembly factor MAT1, centre
Gene ontology(4 items)
CC
transcription factor TFIIH holo complex
MF
cyclin-dependent protein serine/threonine kinase activator activity
BP
nucleotide-excision repair
MF
kinase activity
GO slim(10 items)
CC
transcription factor TFIIH core complex
CC
RNA polymerase II, holoenzyme
MF
transferase activity
BP
phosphorus metabolic process
BP
regulation of biological process
MF
enzyme regulator activity
BP
cellular protein modification process
MF
protein binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.