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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G30270.1
PEP
AT4G30270.1
Position on the Genome Chromosome Chr4
Start Position 14819445
End Position 14820448
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00250310
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Xyloglucan endotransglucosylase/hydrolase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Xyloglucan endotransglucosylase/hydrolase protein 24
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF00722,PF06955
Pfam Description Details
InterPro ID
IPR010713,IPR016455,IPR000757,IPR013320,IPR008263
InterPro Description Details
GO ID
GO:0005886,GO:0042546,GO:0009828,GO:0005737,GO:0010411,GO:0048046,GO:0005794,GO:0005618,GO:0071669,GO:0009505,GO:0099503,GO:0016762,GO:0004553
GO Description Details
GOslim ID
GO:0005794,GO:0005576,GO:0005976,GO:0005737,GO:0005618,GO:0071555,GO:0044085,GO:0043229,GO:0016020,GO:0008150,GO:0031982,GO:0016787,GO:0016740
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT4G30270
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Xyloglucan endotransglucosylase/hydrolase protein 24
OrthoDB(1 item)
145952at33090
Xyloglucan endotransglucosylase/hydrolase
Pfam(2 items)
 
Glycosyl hydrolases family 16
 
Xyloglucan endo-transglycosylase (XET) C-terminus
InterPro(5 items)
 
Xyloglucan endo-transglycosylase, C-terminal
 
Glycoside hydrolase family 16
 
ConA-like_dom_sf
Gene ontology(13 items)
CC
plasma membrane
BP
cell wall biogenesis
BP
plant-type cell wall loosening
BP
xyloglucan metabolic process
CC
Golgi apparatus
BP
plant-type cell wall organization or biogenesis
CC
plant-type cell wall
CC
secretory vesicle
MF
xyloglucan:xyloglucosyl transferase activity
MF
hydrolase activity, hydrolyzing O-glycosyl compounds
GO slim(13 items)
CC
Golgi apparatus
CC
extracellular region
BP
polysaccharide metabolic process
BP
cell wall organization
BP
cellular component biogenesis
CC
intracellular organelle
BP
biological_process
MF
hydrolase activity
MF
transferase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.