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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G28200.1
PEP
AT4G28200.1
Position on the Genome Chromosome Chr4
Start Position 13987808
End Position 13990422
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00325193
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
U3 small nucleolar RNA-associated protein 6
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Uncharacterized protein
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF08640
Pfam Description Details
InterPro ID
IPR011990,IPR003107,IPR013949
InterPro Description Details
GO ID
GO:0000462,GO:0030515
GO Description Details
GOslim ID
GO:0003676,GO:0042254,GO:0006396
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Uncharacterized protein
OrthoDB(1 item)
137787at33090
U3 small nucleolar RNA-associated protein 6
Pfam(1 item)
 
U3 small nucleolar RNA-associated protein 6
InterPro(3 items)
 
TPR-like_helical_dom_sf
 
HAT (Half-A-TPR) repeat
 
U3 small nucleolar RNA-associated protein 6
Gene ontology(2 items)
BP
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
MF
snoRNA binding
GO slim(3 items)
MF
nucleic acid binding
BP
ribosome biogenesis
BP
RNA processing

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.