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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G25110.1
PEP
AT4G25110.1
Position on the Genome Chromosome Chr4
Start Position 12887738
End Position 12889953
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00403072
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, LSD1-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Metacaspase-2
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF06943
Pfam Description Details
InterPro ID
IPR033180,IPR005735
InterPro Description Details
GO ID
GO:0004197,GO:0043069,GO:0006952
GO Description Details
GOslim ID
GO:0050896,GO:0008233,GO:0050789
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT4G25110
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Metacaspase-2
OrthoDB(1 item)
132871at33090
Zinc finger, LSD1-type
Pfam(1 item)
 
LSD1 zinc finger
InterPro(2 items)
 
Metacaspase_type_1_plant
 
Zinc finger, LSD1-type
Gene ontology(3 items)
MF
cysteine-type endopeptidase activity
BP
negative regulation of programmed cell death
BP
defense response
GO slim(3 items)
BP
response to stimulus
MF
peptidase activity
BP
regulation of biological process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.