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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G19520.1
PEP
AT4G19520.1
Position on the Genome Chromosome Chr4
Start Position 10639488
End Position 10647070
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI02032752
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Toll/interleukin-1 receptor homology (TIR) domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Probable disease resistance protein At4g19520
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF07725,PF01582,PF00931
Pfam Description Details
InterPro ID
IPR011713,IPR036390,IPR032675,IPR002182,IPR027417,IPR000157,IPR035897
InterPro Description Details
GO ID
GO:0061809,GO:0005524,GO:0043565,GO:0050135,GO:0043531,GO:0003700,GO:0071456,GO:0005634,GO:0000976,GO:0006952,GO:0007165
GO Description Details
GOslim ID
GO:0003676,GO:0000166,GO:0016787,GO:0005634,GO:0065009,GO:0043167,GO:0050789,GO:0009975,GO:0050896,GO:0006351,GO:0007154
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Probable disease resistance protein At4g19520
OrthoDB(1 item)
43963at33090
Toll/interleukin-1 receptor homology (TIR) domain
Pfam(3 items)
 
Leucine Rich Repeat
 
TIR domain
 
NB-ARC domain
InterPro(7 items)
 
Leucine-rich repeat 3
 
P-loop_NTPase
 
Toll/interleukin-1 receptor homology (TIR) domain
 
Toll_tir_struct_dom_sf
Gene ontology(11 items)
MF
NAD+ nucleotidase, cyclic ADP-ribose generating
MF
sequence-specific DNA binding
MF
NAD(P)+ nucleosidase activity
MF
DNA-binding transcription factor activity
BP
cellular response to hypoxia
MF
transcription regulatory region sequence-specific DNA binding
BP
defense response
BP
signal transduction
GO slim(11 items)
MF
nucleic acid binding
MF
nucleotide binding
MF
hydrolase activity
BP
regulation of molecular function
BP
regulation of biological process
MF
cyclase activity
BP
response to stimulus
BP
transcription, DNA-templated
BP
cell communication

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.