Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G18240.1
PEP
AT4G18240.1
Position on the Genome Chromosome Chr4
Start Position 10082221
End Position 10087044
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00379461
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Starch synthase, catalytic domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Probable starch synthase 4, chloroplastic/amyloplastic
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF08323
Pfam Description Details
InterPro ID
IPR011835,IPR013534
InterPro Description Details
GO ID
GO:0004373,GO:0009011,GO:0033201,GO:0019252,GO:0005982,GO:0009507,GO:0009501
GO Description Details
GOslim ID
GO:0016740,GO:0009536,GO:0009059,GO:0005976
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT4G18240
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Probable starch synthase 4, chloroplastic/amyloplastic
OrthoDB(1 item)
47137at33090
Starch synthase, catalytic domain
Pfam(1 item)
 
Starch synthase catalytic domain
InterPro(2 items)
 
Starch synthase, catalytic domain
Gene ontology(7 items)
MF
glycogen (starch) synthase activity
MF
starch synthase activity
MF
alpha-1,4-glucan synthase activity
BP
starch biosynthetic process
BP
starch metabolic process
GO slim(4 items)
MF
transferase activity
BP
macromolecule biosynthetic process
BP
polysaccharide metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.