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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G17500.1
PEP
AT4G17500.1
Position on the Genome Chromosome Chr4
Start Position 9759405
End Position 9760211
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI02344968
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
AP2/ERF domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
ERF-1
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00847
Pfam Description Details
InterPro ID
IPR001471,IPR036955,IPR016177
InterPro Description Details
GO ID
GO:0005634,GO:0003700,GO:0003677
GO Description Details
GOslim ID
GO:0003676,GO:0065009,GO:0006351,GO:0005634,GO:0050789
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
OrthoDB(1 item)
221752at33090
AP2/ERF domain
Pfam(1 item)
 
AP2 domain
InterPro(3 items)
 
AP2/ERF domain
 
AP2/ERF_dom_sf
 
DNA-bd_dom_sf
Gene ontology(3 items)
MF
DNA-binding transcription factor activity
GO slim(5 items)
MF
nucleic acid binding
BP
regulation of molecular function
BP
transcription, DNA-templated
BP
regulation of biological process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.