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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G13210.2
PEP
AT4G13210.2
Position on the Genome Chromosome Chr4
Start Position 7670040
End Position 7673135
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00319537
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Pectate lyase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Putative pectate lyase 14
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF00544
Pfam Description Details
InterPro ID
IPR011050,IPR018082,IPR002022,IPR012334
InterPro Description Details
GO ID
GO:0045490,GO:0046872,GO:0030570
GO Description Details
GOslim ID
GO:0005976,GO:0043167,GO:0009057,GO:0016829
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT4G13210
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Putative pectate lyase 14
OrthoDB(1 item)
94812at33090
Pectate lyase
Pfam(1 item)
 
Pectate lyase
InterPro(4 items)
 
Pectin_lyase_fold/virulence
 
Pectate lyase
 
Pectin_lyas_fold
Gene ontology(3 items)
BP
pectin catabolic process
MF
metal ion binding
MF
pectate lyase activity
GO slim(4 items)
BP
polysaccharide metabolic process
BP
macromolecule catabolic process
MF
lyase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.