Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G12250.1
PEP
AT4G12250.1
Position on the Genome Chromosome Chr4
Start Position 7289538
End Position 7290848
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00093950
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
NAD(P)-binding domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
UDP-glucuronate 4-epimerase 5
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF16363
Pfam Description Details
InterPro ID
IPR016040,IPR036291
InterPro Description Details
GO ID
GO:0032580,GO:0005768,GO:0005975,GO:0050378,GO:0005794,GO:0005797,GO:0016021,GO:0005802
GO Description Details
GOslim ID
GO:0005975,GO:0005794,GO:0005768,GO:0016020,GO:0016853
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT4G12250
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
UDP-glucuronate 4-epimerase 5
OrthoDB(1 item)
89440at33090
NAD(P)-binding domain
Pfam(1 item)
 
GDP-mannose 4,6 dehydratase
InterPro(2 items)
 
NAD(P)-binding domain
 
NAD(P)-bd_dom_sf
Gene ontology(8 items)
CC
Golgi cisterna membrane
BP
carbohydrate metabolic process
MF
UDP-glucuronate 4-epimerase activity
CC
Golgi apparatus
CC
Golgi medial cisterna
CC
integral component of membrane
CC
trans-Golgi network
GO slim(5 items)
BP
carbohydrate metabolic process
CC
Golgi apparatus
MF
isomerase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.