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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G04670.1
PEP
AT4G04670.1
Position on the Genome Chromosome Chr4
Start Position 2367603
End Position 2371990
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00159420
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
tRNA wybutosine-synthesizing protein
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase
Accession
CrossRef Refseq from UniProt
NA
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF01344,PF02676,PF02475
Pfam Description Details
InterPro ID
IPR036602,IPR006652,IPR003827,IPR030382,IPR029063,IPR015915
InterPro Description Details
GO ID
GO:0008168,GO:0102522,GO:0032259,GO:0008033
GO Description Details
GOslim ID
GO:0016740,GO:0008152,GO:0006396
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase
OrthoDB(1 item)
10427at33090
tRNA wybutosine-synthesizing protein
Pfam(3 items)
 
Kelch motif
 
Methyltransferase TYW3
 
Met-10+ like-protein
InterPro(6 items)
 
tRNA_yW-synthesising-like_sf
 
Kelch repeat type 1
 
tRNA wybutosine-synthesizing protein
 
SAM-dependent methyltransferase TRM5/TYW2-type
 
SAM-dependent_MTases
 
Kelch-typ_b-propeller
Gene ontology(4 items)
MF
methyltransferase activity
MF
tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity
BP
tRNA processing
GO slim(3 items)
MF
transferase activity
BP
metabolic process
BP
RNA processing

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.