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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G00180.1
PEP
AT4G00180.1
Position on the Genome Chromosome Chr4
Start Position 72804
End Position 75089
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00582452
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
YABBY protein
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Axial regulator YABBY 3
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF04690
Pfam Description Details
InterPro ID
IPR006780,IPR036910
InterPro Description Details
GO ID
GO:1902183,GO:0000976,GO:2000024,GO:0010154,GO:0003700,GO:0006355,GO:0009944,GO:0010158,GO:0046872,GO:0045165,GO:0005634
GO Description Details
GOslim ID
GO:0032502,GO:0050789,GO:0032501,GO:0006351,GO:0000003,GO:0003676,GO:0005634,GO:0043167,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
YABBY family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Axial regulator YABBY 3
OrthoDB(1 item)
174922at33090
YABBY protein
Pfam(1 item)
 
YABBY protein
InterPro(2 items)
 
YABBY protein
 
HMG_box_dom_sf
Gene ontology(11 items)
BP
regulation of shoot apical meristem development
MF
transcription regulatory region sequence-specific DNA binding
BP
regulation of leaf development
BP
fruit development
MF
DNA-binding transcription factor activity
BP
regulation of transcription, DNA-templated
BP
polarity specification of adaxial/abaxial axis
BP
abaxial cell fate specification
MF
metal ion binding
BP
cell fate commitment
GO slim(9 items)
BP
developmental process
BP
regulation of biological process
BP
multicellular organismal process
BP
transcription, DNA-templated
MF
nucleic acid binding
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.