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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT4G00050.1
PEP
AT4G00050.1
Position on the Genome Chromosome Chr4
Start Position 17863
End Position 19848
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00693720
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Myc-type, basic helix-loop-helix (bHLH) domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Transcription factor UNE10
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00010
Pfam Description Details
InterPro ID
IPR011598,IPR036638
InterPro Description Details
GO ID
GO:0009416,GO:0010218,GO:0009637,GO:0003700,GO:0009567,GO:0005634,GO:0006351,GO:0046983,GO:0003677,GO:0009845,GO:0009959,GO:0009704,GO:0006355,GO:0090351,GO:0010187,GO:0009506
GO Description Details
GOslim ID
GO:0032502,GO:0006351,GO:0005515,GO:0032501,GO:0050896,GO:0050789,GO:0003676,GO:0055044,GO:0051704,GO:0065009,GO:0005634,GO:0000003
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
bHLH family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Transcription factor UNE10
OrthoDB(1 item)
159551at33090
Myc-type, basic helix-loop-helix (bHLH) domain
Pfam(1 item)
 
Helix-loop-helix DNA-binding domain
InterPro(2 items)
 
Myc-type, basic helix-loop-helix (bHLH) domain
 
HLH_DNA-bd_sf
Gene ontology(16 items)
BP
response to light stimulus
BP
response to far red light
BP
response to blue light
MF
DNA-binding transcription factor activity
BP
double fertilization forming a zygote and endosperm
BP
transcription, DNA-templated
MF
protein dimerization activity
BP
seed germination
BP
negative gravitropism
BP
de-etiolation
BP
regulation of transcription, DNA-templated
BP
seedling development
BP
negative regulation of seed germination
GO slim(12 items)
BP
developmental process
BP
transcription, DNA-templated
MF
protein binding
BP
multicellular organismal process
BP
response to stimulus
BP
regulation of biological process
MF
nucleic acid binding
BP
multi-organism process
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.