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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G60080.1
PEP
AT3G60080.1
Position on the Genome Chromosome Chr3
Start Position 22187635
End Position 22188555
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00533270
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, RING-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
RING-type E3 ubiquitin transferase
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF14369,PF13639
Pfam Description Details
InterPro ID
IPR001841,IPR039525,IPR013083
InterPro Description Details
GO ID
GO:0061630,GO:0006511,GO:0046872
GO Description Details
GOslim ID
GO:0019787,GO:0043167,GO:0009057,GO:0006508,GO:0006464
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
RING-type E3 ubiquitin transferase
OrthoDB(1 item)
199989at33090
Zinc finger, RING-type
Pfam(2 items)
 
zinc-ribbon
 
Ring finger domain
InterPro(3 items)
 
Zinc finger, RING-type
 
E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon
 
Znf_RING/FYVE/PHD
Gene ontology(3 items)
MF
ubiquitin protein ligase activity
BP
ubiquitin-dependent protein catabolic process
MF
metal ion binding
GO slim(5 items)
MF
ubiquitin-like protein transferase activity
BP
macromolecule catabolic process
BP
cellular protein modification process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.