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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G57890.2
PEP
AT3G57890.2
Position on the Genome Chromosome Chr3
Start Position 21438271
End Position 21441695
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01229891
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Tubulin binding cofactor C-like domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
TBCC domain-containing protein 1
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF07986
Pfam Description Details
InterPro ID
IPR039589,IPR006599,IPR012945,IPR016098,IPR017901
InterPro Description Details
GO ID
GO:0000922,GO:0005829,GO:0000902,GO:0005815
GO Description Details
GOslim ID
GO:0005737,GO:0032502,GO:0005856
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G57890
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
TBCC domain-containing protein 1
OrthoDB(1 item)
180488at33090
Tubulin binding cofactor C-like domain
Pfam(1 item)
 
Tubulin binding cofactor C
InterPro(5 items)
 
Tubulin binding cofactor C-like domain
 
C-CAP_CF_C-like
Gene ontology(4 items)
BP
cell morphogenesis
CC
microtubule organizing center
GO slim(3 items)
BP
developmental process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.