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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G57150.1
PEP
AT3G57150.1
Position on the Genome Chromosome Chr3
Start Position 21154255
End Position 21155952
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00189795
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Pseudouridine synthase, catalytic domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
H/ACA ribonucleoprotein complex subunit 4
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF08068,PF01509,PF01472,PF16198
Pfam Description Details
InterPro ID
IPR004802,IPR002501,IPR015947,IPR020103,IPR012960,IPR002478,IPR032819,IPR004521
InterPro Description Details
GO ID
GO:0009506,GO:1990481,GO:0031429,GO:0000495,GO:0031120,GO:0031118,GO:0005829,GO:0009982,GO:0005730,GO:0003723
GO Description Details
GOslim ID
GO:0055044,GO:0042254,GO:0005730,GO:0043412,GO:0016070,GO:0006396,GO:0003676,GO:0005737,GO:0005732,GO:0016853
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G57150
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
H/ACA ribonucleoprotein complex subunit 4
OrthoDB(1 item)
87636at33090
Pseudouridine synthase, catalytic domain superfamily
Pfam(4 items)
 
DKCLD (NUC011) domain
 
TruB family pseudouridylate synthase (N terminal domain)
 
PUA domain
 
tRNA pseudouridylate synthase B C-terminal domain
InterPro(8 items)
 
tRNA_PsdUridine_synth_B_fam
 
Pseudouridine synthase II, N-terminal
 
PsdUridine_synth_cat_dom_sf
 
Dyskerin-like
 
tRNA pseudouridylate synthase B, C-terminal
 
Uncharacterised_CHP00451
Gene ontology(10 items)
BP
mRNA pseudouridine synthesis
CC
box H/ACA snoRNP complex
BP
box H/ACA RNA 3'-end processing
BP
snRNA pseudouridine synthesis
BP
rRNA pseudouridine synthesis
MF
pseudouridine synthase activity
GO slim(10 items)
BP
ribosome biogenesis
BP
macromolecule modification
BP
RNA metabolic process
BP
RNA processing
MF
nucleic acid binding
CC
small nucleolar ribonucleoprotein complex
MF
isomerase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.