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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G55850.5
PEP
AT3G55850.5
Position on the Genome Chromosome Chr3
Start Position 20721866
End Position 20725608
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01204508
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Metal-dependent hydrolase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Protein LONG AFTER FAR-RED 3
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF07969
Pfam Description Details
InterPro ID
IPR011059,IPR013108,IPR032466,IPR033932
InterPro Description Details
GO ID
GO:0016810,GO:0048471,GO:0010218,GO:0009704,GO:0016021,GO:0009845
GO Description Details
GOslim ID
GO:0016787,GO:0005737,GO:0032501,GO:0032502,GO:0016020,GO:0050896
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Protein LONG AFTER FAR-RED 3
OrthoDB(1 item)
61107at33090
Metal-dependent hydrolase
Pfam(1 item)
 
Amidohydrolase family
InterPro(4 items)
 
Metal-dep_hydrolase_composite
 
Amidohydrolase 3
 
Metal_Hydrolase
Gene ontology(6 items)
MF
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
CC
perinuclear region of cytoplasm
BP
response to far red light
BP
de-etiolation
CC
integral component of membrane
BP
seed germination
GO slim(6 items)
MF
hydrolase activity
BP
multicellular organismal process
BP
developmental process
BP
response to stimulus

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.