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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G54890.1
PEP
AT3G54890.1
Position on the Genome Chromosome Chr3
Start Position 20339706
End Position 20340922
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00065358
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Chlorophyll a-b binding protein, chloroplastic
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Chlorophyll a-b binding protein 6, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00504
Pfam Description Details
InterPro ID
IPR022796,IPR023329,IPR001344
InterPro Description Details
GO ID
GO:0009579,GO:0009409,GO:0009768,GO:0010287,GO:0009507,GO:0009534,GO:0016021,GO:0046872,GO:0009941,GO:0009645,GO:0018298,GO:0009535,GO:0016168,GO:0009416,GO:0009644,GO:0009522,GO:0019904,GO:0003729
GO Description Details
GOslim ID
GO:0009536,GO:0043167,GO:0015979,GO:0016020,GO:0050896,GO:0003676,GO:0009521,GO:0005515,GO:0009579,GO:0046906,GO:0006091,GO:0006464
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G54890
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Chlorophyll a-b binding protein 6, chloroplastic
OrthoDB(1 item)
180465at33090
Chlorophyll a-b binding protein, chloroplastic
Pfam(1 item)
 
Chlorophyll A-B binding protein
InterPro(3 items)
 
Chlorophyll A-B binding protein
 
Chlorophyll_a/b-bd_dom_sf
 
Chloro_AB-bd_pln
Gene ontology(18 items)
BP
response to cold
BP
photosynthesis, light harvesting in photosystem I
CC
plastoglobule
CC
chloroplast thylakoid
CC
integral component of membrane
MF
metal ion binding
CC
chloroplast envelope
BP
response to low light intensity stimulus
BP
protein-chromophore linkage
CC
chloroplast thylakoid membrane
MF
chlorophyll binding
BP
response to light stimulus
BP
response to high light intensity
CC
photosystem I
MF
protein domain specific binding
GO slim(12 items)
BP
photosynthesis
BP
response to stimulus
MF
nucleic acid binding
MF
protein binding
MF
tetrapyrrole binding
BP
generation of precursor metabolites and energy
BP
cellular protein modification process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.