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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G53600.1
PEP
AT3G53600.1
Position on the Genome Chromosome Chr3
Start Position 19875532
End Position 19876059
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00403307
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger C2H2 superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Zinc finger protein ZAT18
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
NA
Pfam Description
InterPro ID
IPR013087,IPR036236
InterPro Description Details
GO ID
GO:0009414,GO:0009409,GO:0010200,GO:1902074,GO:0042631,GO:0046872,GO:0005634,GO:0006355,GO:0009611,GO:2000022,GO:0010224,GO:0009753,GO:0006970,GO:1902584,GO:0003700
GO Description Details
GOslim ID
GO:0050896,GO:0050789,GO:0007154,GO:0006351,GO:0003676,GO:0043167,GO:0005634,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
C2H2 family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Zinc finger protein ZAT18
OrthoDB(1 item)
223015at33090
Zinc finger C2H2 superfamily
InterPro(2 items)
 
Zinc finger C2H2-type
Gene ontology(15 items)
BP
response to water deprivation
BP
response to cold
BP
response to chitin
BP
response to salt
BP
cellular response to water deprivation
MF
metal ion binding
BP
regulation of transcription, DNA-templated
BP
response to wounding
BP
regulation of jasmonic acid mediated signaling pathway
BP
response to UV-B
BP
response to jasmonic acid
BP
response to osmotic stress
BP
positive regulation of response to water deprivation
MF
DNA-binding transcription factor activity
GO slim(8 items)
BP
response to stimulus
BP
regulation of biological process
BP
cell communication
BP
transcription, DNA-templated
MF
nucleic acid binding
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.