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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G51890.1
PEP
AT3G51890.1
Position on the Genome Chromosome Chr3
Start Position 19249686
End Position 19250890
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01961792
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Clathrin light chain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Clathrin light chain 3
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF01086
Pfam Description Details
InterPro ID
IPR000996
InterPro Description Details
GO ID
GO:0030125,GO:0030132,GO:0030130,GO:0005829,GO:0005886,GO:0005198,GO:0006886,GO:0032050,GO:0048268,GO:0072583
GO Description Details
GOslim ID
GO:0016050,GO:0005794,GO:0061024,GO:0015031,GO:0016020,GO:0043229,GO:0005773,GO:0032991,GO:0051641,GO:0005737,GO:0005515,GO:0031982,GO:0005575,GO:0016192,GO:0065003,GO:0005198
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Clathrin light chain 3
OrthoDB(1 item)
181609at33090
Clathrin light chain
Pfam(1 item)
 
Clathrin light chain
InterPro(1 item)
 
Clathrin light chain
Gene ontology(10 items)
CC
clathrin vesicle coat
CC
clathrin coat of coated pit
CC
clathrin coat of trans-Golgi network vesicle
CC
plasma membrane
MF
structural molecule activity
BP
intracellular protein transport
MF
clathrin heavy chain binding
BP
clathrin coat assembly
BP
clathrin-dependent endocytosis
GO slim(16 items)
BP
vesicle organization
CC
Golgi apparatus
BP
membrane organization
BP
protein transport
CC
intracellular organelle
CC
protein-containing complex
BP
cellular localization
MF
protein binding
CC
cellular_component
BP
vesicle-mediated transport
BP
protein-containing complex assembly
MF
structural molecule activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.