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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G51110.1
PEP
AT3G51110.1
Position on the Genome Chromosome Chr3
Start Position 18983711
End Position 18984952
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00544062
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Tetratricopeptide repeat-containing domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Tetratricopeptide repeat (TPR)-like superfamily protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF02184
Pfam Description Details
InterPro ID
IPR011990,IPR003107,IPR013026
InterPro Description Details
GO ID
GO:0000245,GO:0000398,GO:0071013,GO:0000974,GO:0071014,GO:0071007
GO Description Details
GOslim ID
GO:0030532,GO:0005681,GO:0032991,GO:0000375,GO:0065003
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Tetratricopeptide repeat (TPR)-like superfamily protein
OrthoDB(1 item)
27011at33090
Tetratricopeptide repeat-containing domain
Pfam(1 item)
 
HAT (Half-A-TPR) repeat
InterPro(3 items)
 
TPR-like_helical_dom_sf
 
HAT (Half-A-TPR) repeat
 
TPR-contain_dom
Gene ontology(6 items)
BP
spliceosomal complex assembly
BP
mRNA splicing, via spliceosome
CC
catalytic step 2 spliceosome
CC
Prp19 complex
CC
post-mRNA release spliceosomal complex
CC
U2-type catalytic step 2 spliceosome
GO slim(5 items)
CC
small nuclear ribonucleoprotein complex
CC
spliceosomal complex
CC
protein-containing complex
BP
RNA splicing, via transesterification reactions
BP
protein-containing complex assembly

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.