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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G50950.1
PEP
AT3G50950.1
Position on the Genome Chromosome Chr3
Start Position 18936127
End Position 18938685
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00648416
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
NB-ARC
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Disease resistance RPP13-like protein 4
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF18052,PF00931
Pfam Description Details
InterPro ID
IPR002182,IPR032675,IPR041118,IPR027417,IPR038005
InterPro Description Details
GO ID
GO:0043621,GO:0005886,GO:0005634,GO:0050829,GO:0043531,GO:0042742,GO:0050776
GO Description Details
GOslim ID
GO:0016020,GO:0044419,GO:0043167,GO:0005634,GO:0050789,GO:0005515,GO:0002376,GO:0050896,GO:0000166
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Disease resistance RPP13-like protein 4
OrthoDB(1 item)
Pfam(2 items)
 
NB-ARC domain
InterPro(5 items)
 
P-loop_NTPase
Gene ontology(7 items)
MF
protein self-association
CC
plasma membrane
BP
defense response to Gram-negative bacterium
BP
defense response to bacterium
BP
regulation of immune response
GO slim(9 items)
BP
interspecies interaction between organisms
BP
regulation of biological process
MF
protein binding
BP
immune system process
BP
response to stimulus
MF
nucleotide binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.