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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G47610.1
PEP
AT3G47610.1
Position on the Genome Chromosome Chr3
Start Position 17549178
End Position 17551204
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00351317
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, C2HC5-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
zf-C2HC5 domain-containing protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF06221
Pfam Description Details
InterPro ID
IPR009349,IPR039128
InterPro Description Details
GO ID
GO:0008270,GO:0005634,GO:0006355
GO Description Details
GOslim ID
GO:0043167,GO:0006351,GO:0005634,GO:0050789
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G47610
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
zf-C2HC5 domain-containing protein
OrthoDB(1 item)
111888at33090
Zinc finger, C2HC5-type
Pfam(1 item)
 
Putative zinc finger motif, C2HC5-type
InterPro(2 items)
 
Zinc finger, C2HC5-type
Gene ontology(3 items)
MF
zinc ion binding
BP
regulation of transcription, DNA-templated
GO slim(4 items)
BP
transcription, DNA-templated
BP
regulation of biological process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.