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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G47540.2
PEP
AT3G47540.2
Position on the Genome Chromosome Chr3
Start Position 17521044
End Position 17522467
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00870648
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Chitin-binding, type 1
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Chitinase family protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00182
Pfam Description Details
InterPro ID
IPR023346,IPR000726
InterPro Description Details
GO ID
GO:0016998,GO:0004568,GO:0006032
GO Description Details
GOslim ID
GO:0006807,GO:0009057,GO:0016787
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G47540
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Chitinase family protein
OrthoDB(1 item)
144379at33090
Chitin-binding, type 1
Pfam(1 item)
 
Chitinase class I
InterPro(2 items)
 
Lysozyme-like_dom_sf
 
Glycoside hydrolase, family 19, catalytic
Gene ontology(3 items)
BP
cell wall macromolecule catabolic process
MF
chitinase activity
BP
chitin catabolic process
GO slim(3 items)
BP
nitrogen compound metabolic process
BP
macromolecule catabolic process
MF
hydrolase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.