Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G45260.1
PEP
AT3G45260.1
Position on the Genome Chromosome Chr3
Start Position 16596850
End Position 16598550
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00406365
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger C2H2-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Zinc finger protein BALDIBIS
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF12171
Pfam Description Details
InterPro ID
IPR013087,IPR036236,IPR022755
InterPro Description Details
GO ID
GO:0046872,GO:0003700,GO:0034504,GO:0045893,GO:0043565,GO:0005634,GO:0010075,GO:0006355
GO Description Details
GOslim ID
GO:0040007,GO:0050789,GO:0006351,GO:0051641,GO:0065009,GO:0003676,GO:0005634,GO:0032501,GO:0043167,GO:0032502
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
C2H2 family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Zinc finger protein BALDIBIS
OrthoDB(1 item)
125901at33090
Zinc finger C2H2-type
Pfam(1 item)
 
Zinc-finger double-stranded RNA-binding
InterPro(3 items)
 
Zinc finger C2H2-type
 
Zinc finger, double-stranded RNA binding
Gene ontology(8 items)
MF
metal ion binding
MF
DNA-binding transcription factor activity
BP
protein localization to nucleus
BP
positive regulation of transcription, DNA-templated
MF
sequence-specific DNA binding
BP
regulation of meristem growth
BP
regulation of transcription, DNA-templated
GO slim(10 items)
BP
regulation of biological process
BP
transcription, DNA-templated
BP
cellular localization
BP
regulation of molecular function
MF
nucleic acid binding
BP
multicellular organismal process
BP
developmental process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.