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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G44890.1
PEP
AT3G44890.1
Position on the Genome Chromosome Chr3
Start Position 16386505
End Position 16387963
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00404238
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Ribosomal protein L9
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
50S ribosomal protein L9, chloroplastic
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF01281,PF03948
Pfam Description Details
InterPro ID
IPR009027,IPR020594,IPR036791,IPR020069,IPR000244,IPR020070,IPR036935
InterPro Description Details
GO ID
GO:0005739,GO:0006412,GO:0003729,GO:0009570,GO:0000311,GO:0009941,GO:0003735,GO:0019843,GO:0005829,GO:0009507
GO Description Details
GOslim ID
GO:0009536,GO:0005840,GO:0003676,GO:0005739,GO:1990904,GO:0005737,GO:0005198
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G44890
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
50S ribosomal protein L9, chloroplastic
OrthoDB(1 item)
207898at33090
Ribosomal protein L9
Pfam(2 items)
 
Ribosomal protein L9, N-terminal domain
 
Ribosomal protein L9, C-terminal domain
InterPro(7 items)
 
Ribosomal_L9/RNase_H1_N
 
Ribosomal_L9_bac/chp
 
Ribosomal_L9_C_sf
 
Ribosomal protein L9, C-terminal
 
Ribosomal protein L9, N-terminal
 
Ribosomal_L9_N_sf
Gene ontology(10 items)
CC
mitochondrion
CC
chloroplast stroma
CC
plastid large ribosomal subunit
CC
chloroplast envelope
MF
structural constituent of ribosome
GO slim(7 items)
MF
nucleic acid binding
CC
mitochondrion
CC
ribonucleoprotein complex
MF
structural molecule activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.