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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G28970.1
PEP
AT3G28970.1
Position on the Genome Chromosome Chr3
Start Position 10987970
End Position 10989782
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00327410
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Defective in cullin neddylation protein
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Defective in cullin neddylation protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF03556
Pfam Description Details
InterPro ID
IPR014764,IPR042460,IPR005176
InterPro Description Details
GO ID
GO:0000151,GO:0009734,GO:0032182,GO:0097602,GO:0005634,GO:0045116,GO:0031624,GO:0051443
GO Description Details
GOslim ID
GO:0006464,GO:0050789,GO:0005634,GO:0000151,GO:0005515,GO:0065009,GO:0007154,GO:0050896,GO:0019787
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Defective in cullin neddylation protein
OrthoDB(1 item)
130495at33090
Defective in cullin neddylation protein
Pfam(1 item)
 
Cullin binding
InterPro(3 items)
 
DCN1-like_PONY
 
Potentiating neddylation domain
Gene ontology(8 items)
CC
ubiquitin ligase complex
BP
auxin-activated signaling pathway
MF
ubiquitin-like protein binding
MF
cullin family protein binding
BP
protein neddylation
MF
ubiquitin conjugating enzyme binding
BP
positive regulation of ubiquitin-protein transferase activity
GO slim(9 items)
BP
cellular protein modification process
BP
regulation of biological process
CC
ubiquitin ligase complex
MF
protein binding
BP
regulation of molecular function
BP
cell communication
BP
response to stimulus
MF
ubiquitin-like protein transferase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.