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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G28860.1
PEP
AT3G28860.1
Position on the Genome Chromosome Chr3
Start Position 10870287
End Position 10877286
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00090454
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
ABC transporter type 1, transmembrane domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
ABC transporter B family member 19
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00005,PF00664
Pfam Description Details
InterPro ID
IPR036640,IPR039421,IPR017871,IPR011527,IPR027417,IPR003439,IPR003593
InterPro Description Details
GO ID
GO:0048364,GO:0005886,GO:0042626,GO:0005524,GO:0009926,GO:0090691,GO:0048443,GO:0010541,GO:0010218,GO:0055085,GO:0009639,GO:0010329,GO:0009734,GO:0009958,GO:0043481,GO:0048527,GO:0009637,GO:0016021,GO:0016887,GO:0009733,GO:0060918,GO:0008361,GO:0009640,GO:0005829,GO:0010540
GO Description Details
GOslim ID
GO:0050896,GO:0032501,GO:0007154,GO:0065008,GO:0032502,GO:0043167,GO:0016043,GO:0050789,GO:0006810,GO:0009914,GO:0043473,GO:0016020,GO:0000003,GO:0005215,GO:0005737,GO:0016787,GO:0000166
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G28860
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
ABC transporter B family member 19
OrthoDB(1 item)
4405at33090
ABC transporter type 1, transmembrane domain
Pfam(2 items)
 
ABC transporter
 
ABC transporter transmembrane region
InterPro(7 items)
 
Type_I_exporter
 
ABC_transporter_CS
 
ABC transporter type 1, transmembrane domain
 
P-loop_NTPase
 
ABC transporter-like
 
AAA+ ATPase domain
Gene ontology(25 items)
BP
root development
CC
plasma membrane
MF
ATPase-coupled transmembrane transporter activity
BP
auxin polar transport
BP
formation of plant organ boundary
BP
stamen development
BP
acropetal auxin transport
BP
response to far red light
BP
transmembrane transport
BP
response to red or far red light
MF
auxin efflux transmembrane transporter activity
BP
auxin-activated signaling pathway
BP
positive gravitropism
BP
anthocyanin accumulation in tissues in response to UV light
BP
lateral root development
BP
response to blue light
CC
integral component of membrane
MF
ATPase activity
BP
response to auxin
BP
auxin transport
BP
regulation of cell size
BP
photomorphogenesis
BP
basipetal auxin transport
GO slim(17 items)
BP
response to stimulus
BP
multicellular organismal process
BP
cell communication
BP
regulation of biological quality
BP
developmental process
BP
cellular component organization
BP
regulation of biological process
BP
hormone transport
MF
transporter activity
MF
hydrolase activity
MF
nucleotide binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.