Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G25730.1
PEP
AT3G25730.1
Position on the Genome Chromosome Chr3
Start Position 9396505
End Position 9397506
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00403947
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
DNA-binding domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
AP2/ERF and B3 domain-containing transcription factor ARF14
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00847,PF02362
Pfam Description Details
InterPro ID
IPR036955,IPR015300,IPR016177,IPR001471,IPR003340
InterPro Description Details
GO ID
GO:0009873,GO:0003700,GO:0005634,GO:0000976
GO Description Details
GOslim ID
GO:0006351,GO:0005634,GO:0050789,GO:0005575,GO:0007154,GO:0050896,GO:0003676,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
RAV family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G25730
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
AP2/ERF and B3 domain-containing transcription factor ARF14
OrthoDB(1 item)
158816at33090
DNA-binding domain superfamily
Pfam(2 items)
 
AP2 domain
 
B3 DNA binding domain
InterPro(5 items)
 
AP2/ERF_dom_sf
 
DNA-bd_pseudobarrel_sf
 
DNA-bd_dom_sf
 
AP2/ERF domain
 
B3 DNA binding domain
Gene ontology(4 items)
BP
ethylene-activated signaling pathway
MF
DNA-binding transcription factor activity
MF
transcription regulatory region sequence-specific DNA binding
GO slim(8 items)
BP
transcription, DNA-templated
BP
regulation of biological process
CC
cellular_component
BP
cell communication
BP
response to stimulus
MF
nucleic acid binding
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.