Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G25150.2
PEP
AT3G25150.2
Position on the Genome Chromosome Chr3
Start Position 9157161
End Position 9160052
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01225097
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Nuclear transport factor 2
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF02136,PF00076
Pfam Description Details
InterPro ID
IPR002075,IPR035979,IPR018222,IPR039539,IPR032710,IPR012677,IPR000504
InterPro Description Details
GO ID
GO:0005829,GO:0003729,GO:1990904
GO Description Details
GOslim ID
GO:0005737,GO:0003676,GO:1990904
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
OrthoDB(1 item)
131707at33090
Nuclear transport factor 2
Pfam(2 items)
 
Nuclear transport factor 2 (NTF2) domain
 
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
InterPro(7 items)
 
Nuclear transport factor 2
 
RBD_domain_sf
 
Nuclear_transport_factor_2_euk
 
Ras_GTPase_bind_prot
 
NTF2-like_dom_sf
 
Nucleotide-bd_a/b_plait_sf
 
RNA recognition motif domain
Gene ontology(3 items)
CC
ribonucleoprotein complex
GO slim(3 items)
MF
nucleic acid binding
CC
ribonucleoprotein complex

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.