Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G22880.1
PEP
AT3G22880.1
Position on the Genome Chromosome Chr3
Start Position 8097948
End Position 8100740
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00675349
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
DNA recombination and repair protein Rad51-like, C-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Meiotic recombination protein DMC1 homolog
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF08423
Pfam Description Details
InterPro ID
IPR027417,IPR013632,IPR011940,IPR010995,IPR020587,IPR020588,IPR033925,IPR016467,IPR003593
InterPro Description Details
GO ID
GO:0003690,GO:0000150,GO:0005634,GO:0008094,GO:0070192,GO:0006312,GO:0005524,GO:0010212,GO:0006259,GO:0007131,GO:0000794,GO:0051026,GO:0042148,GO:0003697,GO:0000730,GO:0051321
GO Description Details
GOslim ID
GO:0000166,GO:0065003,GO:0006259,GO:0006281,GO:0005634,GO:0000280,GO:0007049,GO:0050896,GO:0000003,GO:0005694,GO:0003676,GO:0003824,GO:0051276,GO:0007059,GO:0022607,GO:0043167,GO:0016787
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G22880
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Meiotic recombination protein DMC1 homolog
OrthoDB(1 item)
157046at33090
DNA recombination and repair protein Rad51-like, C-terminal
Pfam(1 item)
InterPro(9 items)
 
P-loop_NTPase
 
DNA recombination and repair protein Rad51-like, C-terminal
 
DNA_repair_Rad51/TF_NusA_a-hlx
 
RecA_monomer-monomer_interface
 
Rad51_DMC1_RadA
 
DNA_recomb/repair_RecA-like
 
AAA+ ATPase domain
Gene ontology(16 items)
MF
double-stranded DNA binding
MF
recombinase activity
MF
DNA-dependent ATPase activity
BP
chromosome organization involved in meiotic cell cycle
BP
mitotic recombination
BP
response to ionizing radiation
BP
DNA metabolic process
BP
reciprocal meiotic recombination
CC
condensed nuclear chromosome
BP
chiasma assembly
BP
strand invasion
MF
single-stranded DNA binding
BP
DNA recombinase assembly
BP
meiotic cell cycle
GO slim(17 items)
MF
nucleotide binding
BP
protein-containing complex assembly
BP
DNA metabolic process
BP
nuclear division
BP
response to stimulus
MF
nucleic acid binding
MF
catalytic activity
BP
chromosome organization
BP
chromosome segregation
BP
cellular component assembly
MF
hydrolase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.