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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G22200.2
PEP
AT3G22200.2
Position on the Genome Chromosome Chr3
Start Position 7835457
End Position 7838863
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01389553
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Pyridoxal phosphate-dependent transferase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Gamma-aminobutyrate transaminase POP2, mitochondrial
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF00202
Pfam Description Details
InterPro ID
IPR015421,IPR015424,IPR015422,IPR005814
InterPro Description Details
GO ID
GO:0102351,GO:0048364,GO:0048366,GO:0010033,GO:0009943,GO:0006540,GO:0050897,GO:0006541,GO:0010183,GO:0009450,GO:0006020,GO:0006536,GO:0046686,GO:0005774,GO:0004015,GO:0009448,GO:0030170,GO:0019484,GO:0034387,GO:0009865,GO:0003867,GO:0006979,GO:0009860,GO:0005829,GO:0048367,GO:0009102,GO:0008270,GO:0010154,GO:0005985,GO:0009651,GO:0005739,GO:0005794,GO:0006105
GO Description Details
GOslim ID
GO:0043167,GO:0032501,GO:0016740,GO:0032502,GO:0007155,GO:0019842,GO:0051704,GO:0006520,GO:0000003,GO:0050896,GO:0005739,GO:0016020,GO:0006082,GO:0005737,GO:0016049,GO:0005773,GO:0006766,GO:0006790,GO:0005975,GO:0007154,GO:0016829,GO:0006066,GO:0005794,GO:0040011,GO:0051703,GO:0046483,GO:0043603
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G22200
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Gamma-aminobutyrate transaminase POP2, mitochondrial
OrthoDB(1 item)
52604at33090
Pyridoxal phosphate-dependent transferase
Pfam(1 item)
 
Aminotransferase class-III
InterPro(4 items)
 
PyrdxlP-dep_Trfase_major
 
PyrdxlP-dep_Trfase
 
PyrdxlP-dep_Trfase_dom1
 
Aminotransferase class-III
Gene ontology(33 items)
MF
gamma-aminobutyrate transaminase (glyoxylate dependent) activity
BP
root development
BP
leaf development
BP
response to organic substance
BP
adaxial/abaxial axis specification
BP
glutamate decarboxylation to succinate
MF
cobalt ion binding
BP
glutamine metabolic process
BP
pollen tube guidance
BP
gamma-aminobutyric acid catabolic process
BP
inositol metabolic process
BP
glutamate metabolic process
BP
response to cadmium ion
CC
vacuolar membrane
MF
adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BP
gamma-aminobutyric acid metabolic process
MF
pyridoxal phosphate binding
BP
beta-alanine catabolic process
MF
4-aminobutyrate:pyruvate transaminase activity
BP
pollen tube adhesion
MF
4-aminobutyrate transaminase activity
BP
response to oxidative stress
BP
pollen tube growth
BP
shoot system development
BP
biotin biosynthetic process
MF
zinc ion binding
BP
fruit development
BP
sucrose metabolic process
BP
response to salt stress
CC
mitochondrion
CC
Golgi apparatus
BP
succinate metabolic process
GO slim(27 items)
BP
multicellular organismal process
MF
transferase activity
BP
developmental process
BP
cell adhesion
MF
vitamin binding
BP
multi-organism process
BP
cellular amino acid metabolic process
BP
response to stimulus
CC
mitochondrion
BP
organic acid metabolic process
BP
vitamin metabolic process
BP
sulfur compound metabolic process
BP
carbohydrate metabolic process
BP
cell communication
MF
lyase activity
BP
alcohol metabolic process
CC
Golgi apparatus
BP
intraspecies interaction between organisms
BP
heterocycle metabolic process
BP
cellular amide metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.