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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G16830.1
PEP
AT3G16830.1
Position on the Genome Chromosome Chr3
Start Position 5731709
End Position 5737531
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00410073
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
WD40 repeat
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Topless-related protein 2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00400
Pfam Description Details
InterPro ID
IPR027728,IPR006595,IPR017986,IPR019775,IPR015943,IPR011047,IPR001680,IPR036322,IPR006594
InterPro Description Details
GO ID
GO:0005634,GO:0006355,GO:0010072
GO Description Details
GOslim ID
GO:0032501,GO:0000003,GO:0032502,GO:0050789,GO:0006351,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Topless-related protein 2
OrthoDB(1 item)
5921at33090
WD40 repeat
Pfam(1 item)
 
WD domain, G-beta repeat
InterPro(9 items)
 
WD40_repeat_dom
 
WD40_repeat_CS
 
WD40/YVTN_repeat-like_dom_sf
 
Quinoprotein_ADH-like_supfam
 
WD40_repeat_dom_sf
 
LIS1 homology motif
Gene ontology(3 items)
BP
regulation of transcription, DNA-templated
BP
primary shoot apical meristem specification
GO slim(6 items)
BP
multicellular organismal process
BP
developmental process
BP
regulation of biological process
BP
transcription, DNA-templated

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.