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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G11200.1
PEP
AT3G11200.1
Position on the Genome Chromosome Chr3
Start Position 3508387
End Position 3510418
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00582372
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, PHD-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
PHD finger protein ALFIN-LIKE 2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF12165,PF00628
Pfam Description Details
InterPro ID
IPR044104,IPR001965,IPR013083,IPR021998,IPR019786,IPR019787,IPR011011
InterPro Description Details
GO ID
GO:0005634,GO:0006325,GO:0000976,GO:0006355,GO:0046872,GO:0042393,GO:0005829,GO:0003712
GO Description Details
GOslim ID
GO:0009059,GO:0050789,GO:0003676,GO:0065009,GO:0006351,GO:0016070,GO:0051276,GO:0005737,GO:0043167,GO:0005634,GO:0005515
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
PHD finger protein ALFIN-LIKE 2
OrthoDB(1 item)
192515at33090
Zinc finger, PHD-type
Pfam(2 items)
 
PHD-finger
InterPro(7 items)
 
Znf_RING/FYVE/PHD
 
Zinc_finger_PHD-type_CS
 
Zinc finger, PHD-finger
Gene ontology(8 items)
BP
chromatin organization
MF
transcription regulatory region sequence-specific DNA binding
BP
regulation of transcription, DNA-templated
MF
metal ion binding
MF
histone binding
MF
transcription coregulator activity
GO slim(11 items)
BP
macromolecule biosynthetic process
BP
regulation of biological process
MF
nucleic acid binding
BP
regulation of molecular function
BP
transcription, DNA-templated
BP
RNA metabolic process
BP
chromosome organization
MF
protein binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.