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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G06380.1
PEP
AT3G06380.1
Position on the Genome Chromosome Chr3
Start Position 1936384
End Position 1938028
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00402497
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Tubby, C-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Tubby-like F-box protein 9
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00646,PF01167
Pfam Description Details
InterPro ID
IPR036047,IPR001810,IPR000007,IPR018066,IPR025659
InterPro Description Details
GO ID
GO:0006355,GO:0009738,GO:0005886,GO:0009620,GO:0016567
GO Description Details
GOslim ID
GO:0050896,GO:0016020,GO:0050789,GO:0044419,GO:0006351,GO:0007154,GO:0006464
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Tubby-like F-box protein 9
OrthoDB(1 item)
90035at33090
Tubby, C-terminal
Pfam(2 items)
 
F-box domain
 
Tub family
InterPro(5 items)
 
F-box-like_dom_sf
 
Tubby, C-terminal
Gene ontology(5 items)
BP
regulation of transcription, DNA-templated
BP
abscisic acid-activated signaling pathway
CC
plasma membrane
BP
response to fungus
BP
protein ubiquitination
GO slim(7 items)
BP
response to stimulus
BP
regulation of biological process
BP
interspecies interaction between organisms
BP
transcription, DNA-templated
BP
cell communication
BP
cellular protein modification process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.