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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G04230.1
PEP
AT3G04230.1
Position on the Genome Chromosome Chr3
Start Position 1113169
End Position 1113609
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00582620
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Ribosomal protein S5 domain 2-type fold
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
40S ribosomal protein S16-2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00380
Pfam Description Details
InterPro ID
IPR014721,IPR020568,IPR000754
InterPro Description Details
GO ID
GO:0042788,GO:0022627,GO:0015935,GO:0022626,GO:0006412,GO:0005829,GO:0003735,GO:0005730,GO:0000462,GO:0003723
GO Description Details
GOslim ID
GO:0006396,GO:0005730,GO:0015935,GO:0005737,GO:0005840,GO:0003676,GO:0005198,GO:0005844,GO:0042254
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G04230
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
40S ribosomal protein S16-2
OrthoDB(1 item)
203387at33090
Ribosomal protein S5 domain 2-type fold
Pfam(1 item)
 
Ribosomal protein S9/S16
InterPro(3 items)
 
Ribosomal_S5_D2-typ_fold_subgr
 
Ribosomal_S5_D2-typ_fold
 
Ribosomal protein S9
Gene ontology(10 items)
CC
polysomal ribosome
CC
cytosolic small ribosomal subunit
CC
small ribosomal subunit
CC
cytosolic ribosome
MF
structural constituent of ribosome
BP
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO slim(9 items)
BP
RNA processing
CC
small ribosomal subunit
MF
nucleic acid binding
MF
structural molecule activity
BP
ribosome biogenesis

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.